Classifies RNA Structure Change in Chemical Mapping Data

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Documentation for package ‘classSNitch’ version 0.13.0

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classSNitch-package Package for the autonomous classification of RNA structure change
classifyRNA classifyRNA
classify_default classify_default
classSNitch Package for the autonomous classification of RNA structure change
getChange getChangeVar
getChangeRange getChangeRange
getChangeVar getChangeVar
getContiguous getContiguous
getESDC getESDC
getFeatures getFeatures
getMagCC getMagCC
getPatternCC getPatternCC
getTimeWarping getTimeWarping
mutmap Consensus classification, magnitude change, and pattern change in example RNAs
normalize normalize
predict predict.classifyRNA
predict.classifyRNA predict.classifyRNA
reduceNoise reduceNoise
shape_ex 16S rRNA four-way junction wild-type and mutant SHAPE data
Var getChangeVar